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Species belonging to selected taxon:

Gossypium hirsutum



ABOUT THIS RECORD

ID: MNEST048493
species: Gossypium hirsutum
miRNA family: MIR162
source: PMRD, original name: ghr-miR162a

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGAGGCAGCGGTTCATCGATC

mismatches: 3
bulges: 0

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pre-miRNA
TTTTTAGCGTTGGGGTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTGTTGTGAGAATAACACAAATACATGAATCGATCGATAA
ACCTCTGCATCCAG
CGCCTTAACTCTCCATGAAGTTTTATGTTAGTTA


dot-bracket secondary structure
....((((...(((((.(((.(.(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)
))).)))).)))))
.).))).))))).(((((....)))))...))))



SIMILARITIES
miRBase ghr-MIR162a: 2e-80

PMRD cpa-miR162a: 1e-25

microPC miR162: 2e-46
UniProt no hits

RFAM MIR162_2: 1e-20

Identical with: miR162 from microPC (MNEST045545)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"




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